Publications

Publications of the BRADY project

Publications

• Rehák Bučková B., Fraza Ch., Rehák R., Kolenič M., Beckmann Ch., Španiel F., Marquand A. and Hlinka J. (2024). Using normative models pre-trained on cross-sectional data to evaluate longitudinal changes in neuroimaging data. eLife 13:RP95823. (preprint, publisher, permanent link).

• Kordek D.,  Young L., Voda P. and Kremláček J. (2024). Motion onset VEPs can see through the blur. Scientific Reports, 14 (1) 21296. (preprint, publisher, permanent link).

• Hok P., Thong Thai Q., Rehák Bučková B., Domin M., Řasová K., Tintěra J., Lotze M., Grothe M. and Hlinka J. (2024). Global functional connectivity reorganization reflects cognitive processing speed deficits and fatigue in multiple sclerosis. European Journal of Neorology, e16421. (publisher, permanent link).

• Urbanec J., Chládková K. and Kremláček J. (2024). Neural processing of speech sounds at premature and term birth: ERPs and MMR between 32 and 42 weeks of gestation. Developmental Cognitive Neuroscience, Volume 70 (preprint, publisher, permanent link).

• Berling D., Baroni L., Chaffiol A., Gauvain G., Picaud S. and  Antolík J. (2024). Optogenetic stimulation recruits cortical neurons in a morphology-dependent manner. Journal of Neuroscience 18 October 2024, e1215242024 (preprint, publisher, permanent link). 

• Hammer J., Kajšová M., Kalina A., Krysl D., Fabera P., Kudr M., Ježdík P., Janča R., Krsek P. and Marusic P. (2024). Antagonistic behavior of brain networks mediated by low-frequency oscillations: electrophysiological dynamics during internal–external attention switching. Commun Biol 7, 1105 (preprint, publisher, permanent link).

• McWhinney, S. R., Hlinka, J., Bakstein, E., Dietze, L. M. F., Corkum, E. L. V., Abé, C., Alda, M., Alexander, N., Benedetti, F., Berk, M., Bøen, E., Bonnekoh, L. M., Boye, B., Brosch, K., Canales-Rodríguez, E. J., Cannon, D. M., Dannlowski, U., Demro, C., Diaz-Zuluaga, A., … Hajek, T. (2024). Principal component analysis as an efficient method for capturing multivariate brain signatures of complex disorders—ENIGMA study in people with bipolar disorders and obesity. Human Brain Mapping, 45(8), e26682 (publisher, permanent link).

• Strobl J., Viktorin V., Piorecký M., Griskova-Bulanova I., Hubený J., Brunovský M., Páleníček T. and Koudelka V. (2024). Unveiling stimulus transduction artifacts in auditory steady-state response experiments: Characterization, risks, and mitigation strategies. Biomedical Signal Processing and Control, Volume 101 (publisher, permanent link).   

• Jiricek S., Koudelka V., Mantini D., Marecek R. and Hlinka J. (2025). Spatial (Mis)match Between EEG and fMRI Signal Patterns Revealed by Spatio-Spectral Source-Space EEG Decomposition. Frontiers in Neuroscience (publisher,  preprint).

• Davoodi A., Holeňa M., Brunovský M., Kathpalia A., Hlinka J., Bareš M. and Paluš M. (2025). Response prediction of antidepressants: Using graph theory tools for brain network connectivity analysis. Biomedical Signal Processing and Control, Volume 103 (publisher, permanent link, preprint).

• Výtvarová E., Lamoš M., Hlinka J. Goldemundová S., Rektor I. and Bočková M. (2024). Revealing connectivity patterns of deep brain stimulation efficacy in Parkinson’s disease. Sci Rep 14, 31652 (publisher, permanent link, preprint).

• Splítková B., Macková K., Koblížek M., Holubová Z., Kyncl M., Bukacova K. ... Krsek P. (2024). A new perspective on drug-resistant epilepsy in children with focal cortical dysplasia type 1: From challenge to favorable outcome. Epilepsia,  00: 1–16 (publisher, permanent link).

• Filip P., Vojtíšek L., Jičínská A. M., Valenta Z., Horák O., Hrunka M., Mangia S., Michaeli S. and Jabandžiev P. (2024). Wide-spread brain alterations early after the onset of Crohn’s disease in children in remission—a pilot study. Front. Neurosci, 18:1491770 (publisher, permanent link, preprint).

• Filip P.,  J. McCarten R.,  Hemmy L.,  Crocker J.,  Wolf M.,  Thotland J.,  Cayci Z.,  Michaeli S.,  Eberly L. E.,  Terpstra M. and  Mangia S.  (2025). Different Grey Matter Microstructural Patterns in Cognitively Healthy Versus Typical Ageing. NMR in Biomedicine, 38: e5305 (publisher, permanent link, preprint).

• Korenek J., Sanda P. and Hlinka J. (2025) Definition of Higher Order Causality in Complex Systems. Phys. rev. E 111, L042302 (publisher, permanent link, preprint).

• Tereza Klučková, Marek Nikolič, Filip Tylš, Vojtěch Viktorin, Čestmír Vejmola, Michaela Viktorinová, Anna Bravermanová, Renáta Androvičová, Veronika Andrashko, Jakub Korčák, Peter Zach, Kateřina Hájková, Martin Kuchař, Marie Balíková, Martin Brunovský, Jiří Horáček, Tomáš Páleníček (2025). The phenomenology of psilocybin’s experience mediates subsequent persistent psychological effects independently of sex, previous experience or setting. Pharmacol. Rep. (publisher, permanent link, preprint).

• Sofiia Moraresku, Jiri Hammer, Vasileios Dimakopoulos, Michaela Kajsova, Radek Janca, Petr Jezdik, Adam Kalina, Petr Marusic, Kamil Vlcek (2025). Neural dynamics of visual streams interactions during memory-guided actions investigated by intracranial EEG. Neurosci. Bull. (publisher, permanent link, preprint).

• Viktória Kokošová, Lubomír Vojtíšek, Marek Baláž, Silvia Mangia, Shalom Michaeli, Pavel Filip (2024). Sleep quality and the integrity of ascending reticular activating system – a multimodal MRI study. Heliyon, 10 (22) (publisher, permanent link, preprint).

• Saptarshi Ghosh, Isa Dallmer-Zerbe, Barbora Rehak Buckova, Jaroslav Hlinka (2025). Amplitude entropy to capture chimera-like behavior in the altered brain dynamics during seizures. Sci Rep 15, 14212 (publisher, permanent link, preprint).

• Małgorzata Wójcik, Přemysl Vlček, Idzi Siatkowski, Marcela Grünerová-Lippertová (2025). Effects of a single tDCS with mirror therapy stimulation on hand function in healthy individuals. Front. Hum. Neurosci. 19:1607022. (publisher, permanent link).

• Michal Beneš, Tomáš Páleníček, Jiří Horáček (2025). What fMRI studies say about the nature of the psychedelic effect: a scoping review. Front. Neurosci. 19:1606798 (publisher, permanent link, preprint).

• Přemysl Vlček, Jiří Horáček, Marcela Grünerová-Lippertová, Martin Brunovský (2025). Therapeutic potential of acetyl-DL-leucine and its L-enantiomer in posterior fossa syndrome: Mechanistic insights. Drug Discovery Today, 30 (6) (publisher, permanent link).

• I. Dallmer-Zerbe, J. Kopal, A. Pidnebesna, J. Curot, M. Denuelle, A.De Barros, J.C. Sol, L. Valton, E.J. Barbeau, J. Hlinka (2025). Pro-ictal, rather than pre-ictal, brain state marked by global critical slowing and local gamma power increase. Clinical Neurophysiology, Volume 175 (publisher, permanent link, preprint).

• Pavel Filip, Andrej Lasica, Dimitra Kiakou, Karsten Mueller, Jiří Keller, Dušan Urgošík, Daniel Novák, Robert Jech (2025). Sweet spot for resting-state functional MRI effect of deep brain stimulation in dystonia lies in the lower pallidal area. NeuroImage: Clinical, Volume 45, 103750 (publisher, permanent link).

•  Čestmír Vejmola, Klára Šíchová, Kateřina Syrová, Lucie Janečková, Vlastimil Koudelka, Michael Tesař, Marek Nikolič, Michaela Viktorinová, Filip Tylš, Jakub Korčák, Vojtěch Viktorin, Eduard Kelemen, Tereza Nekovářová, Martin Brunovský, Jiří Horáček, Martin Kuchař, Tomáš Páleníček (2025). Cross-Species Evidence for Psilocin-Induced Visual Distortions: Apparent Motion Is Perceived by Both Humans and Rats. Biological Psychiatry Global Open Science, 5 (5) (publisher, permanent link, preprint).

• Weng-Lam Chan, Sebastian Olbrich, Xinwen Jiang, Haoyun Zhang, Cheng-Teng Ip, Martin Brunovsky (2025). Subanesthetic ketamine alters EEG signal complexity: Implications for treatment stratification in depression. Journal of Affective Disorders, Volume 386, 119477 (publisher, permanent link, preprint).

• Petra Horká, Josefina Mavrogeni, Veronika Langová, Pavel Horký, Jan Hubený, Ivana Chrtková, Karel Valeš, Martin Kuchař, Jiří Horáček (2025). "Effects of Clozapine, Haloperidol, and the NMDA Antagonist Ketamine on Novel Object Recognition in Gnathonemus petersii: A New Possible Model for Schizophrenia Research" Fishes 10, no. 5: 229 (publisher, permanent link).

• Dan Fayette, Veronika Juríčková, Iveta Fajnerová, Jiří Horáček, and Tomáš Kozák (2025). The Effect of Chemotherapy Treatment on Cognitive Impairment and Clinical Symptoms in Hodgkin Lymphoma Patients. Cancers, 17(9), 1488 (publisher, permanent link).

• Horacek, J., & Kesner, L. (2024). Strukturální a funkční architektura mozku. In Mozek a jeho člověk, mysl a její nemoc (s. 21–31). Galén (permanent link).

• Horáček, J., & Kesner, L. (2024). Biologické a kulturní determinanty evoluce vědomí. In Mozek a jeho člověk - mysl a její nemoc (s. 61–69). Galén (permanent link).

• Juraj, J., & Langova, V. (2024). Řeč - artikulace mysli a zrcadlo vnitřního světa. In Mozek a jeho člověk - mysl a její nemoc (s. 198–207). Galén (permanent link).

• Adámek, P., Grygarová, D., & Kesner, L. (2024). Kognitivní neurověda a vnímání umění. In Mozek a jeho člověk - mysl a její nemoc (s. 256–266). Galén (permanent link).

• Klirova, M., & Rotbauer, D. (2024). Metody neinvazivní mozkové stimulace a jejich aplikace v moderní medicíně. In Mozek a jeho člověk - mysl a její nemoc (s. 334–338). Galén (permanent link).

• Kelemen, E., Lavrova, K., & Hanzlík, A.-F. (2024). Kódování informací v mozku a jejich organizace. In Mozek a jeho člověk - mysl a její nemoc (s. 33–38). Galén (permanent link). 

• Kelemen, E., & Kopřivová, J. (2024). Konsolidace paměti ve spánku. In Mozek a jeho člověk - mysl a její nemoc (s. 47–53). Galén (permanent link).

• Manková, D., Weissova, K., Andrlíková, E., Janků, K., Kliková, M., Dudysova, D., Šmotek, M., Kopřivová, J., & Bendova, Z. (2024). Ranní ptáče dál doskáče. ale co sovy?. In Mozek a jeho člověk - mysl a její nemoc (s. 168–173). Galén (permanent link).

• Kozáková, E., Havlíček, O., & Bečev, O. (2024). Ukradené myšlenky a ovládané ruce: anomální prožívání vlastního já a jeho činů. In Mozek a jeho člověk - mysl a její nemoc (s. 211–219). Galén (permanent link)..

• Ondřej Bečev, Olga Laskov, Eduard Bakštein, Jiří Štrobl, Jan Hubený, Nina Biačková, Nikol Schlezingerová, Tomáš Novák, Pavel Mohr, Monika Klírová (2025). High-frequency neurostimulation of the right inferior parietal cortex alters the sense of agency: Results from tACS/tRNS and rTMS-EEG studies. NeuroImage Vol. 318 (publisher, permanent link, preprint).

• Valentin Ladenhauf, Malik Galijasevic, Milovan Regodic, Jakub Bochnička et al. (2025). Arterial wall enhancement indicates higher reperfusion rates in non-ruptured aneurysms after endovascular treatment with stent-assisted coiling. Neuroradiology, Vol 67, p. 2327–2335 (publisher, permanent link).

• David Berling, Jan Střeleček, Tomáš Iser, Ján Antolík (2025). An open-source replication for fast and accessible light propagation modeling in brain tissue. PLOS ONE 20 (9) (publisher, permanent link).

• Ivana Chrtkova, Vlastimil Koudelka, Veronika Langova et al. (2025). Unsupervised electric signal separation for linking behavior and electrocommunication in Gnathonemus petersii. Sci Rep 15, 33542 (publisher, permanent link, preprint).

• Jakub Bochnička, Jan Kremláček (2025). Use of functional magnetic resonance imaging in the evaluation of neural plasticity in macular degeneration. Front. Neurosci. 19:1622244 (publisher, permanent link).

• Václava Piorecka, Čestmír Vejmola, Petra Peškova et al. (2025). Microstate in rats’ EEG: a proof of concept study. Transl Psychiatry. 15, 494 (publisher, permanent link, preprint).

• Filip Spaniel, Jiri Anyz, Dominika Grygarova, Jan Hubeny, Vlastimil Koudelka, Ilia Shalkin, Jan Strobl, Jaroslav Hlinka, Tomas Nagy, Lea Jakob, Jakub Schneider, Jan Kudelka, Eduard Bakstein (2025). Infra-slow frequency oscillations propagating through multiple organs convey information on phase-specific timing for self-initiated actions. Brain Research, Vol. 1867 (publisher, permanent link, preprint).

• Andre F Marquand, Barbora Rehák Bučková, Giulia Cattaranusi, Camilla Flaaten, Cecilie Busch, Cecilie K Lemvigh, Veenu Gupta, Charlotte Fraza, Lars T Westlye, Ole A Andreassen, Jaroslav Hlinka, Bjørn H Ebdrup, David Shiers, Torill Ueland, Paola Dazzan (2025). Learning Latent Profiles via Cognitive Growth Charting in Psychosis: Design and Rationale for the PRECOGNITION Project, Schizophrenia Bulletin Open, Volume 6, Issue 1 (publisher, permanent link, preprint).

• Rádlová, S., Pidnebesna, A., Chomik, A., Tomeček, D., Hlinka, J., Frynta, D., & Landová, E. (2025). From ancient fears to airborne threats: fMRI insights into neural fear responses. Brain and Cognition, 191, 106371. (publisher, permanent link, preprint)

• Chutná, M., Kremláček, J., Kuba, M. et al. (2025). Comparison of visual evoked potential variability in eyes affected by optic neuritis and fellow eyes. Doc Ophthalmol. (publisher, permanent link)

• Lisgaras CP, de la Prida LM, Bertram E, Cunningham M, Henshall D, Liu AA, et al. (2025). The role of electroencephalography in epilepsy research—From seizures to interictal activity and comorbidities. Epilepsia. 66: 1374–1393. (publisher, permanent link)

• Kudlacek, J., Chvojka, J., Kralikova, M., Kylarova, S., Ravi, T., Novak, O., Otahal, J., Balastik, M., & Jiruska, P. (2025). Interictal activity fluctuations follow rather than precede seizures on multiple time scales in a mouse model of focal cortical dysplasia. Neurobiology of Disease, 216, 107102. (publisher, permanent link, preprint) 

• Mikroulis, A., Lasica, A., Filip, P., Bakstein, E., & Novak, D. (2025). Patient-specific and interpretable deep brain stimulation optimisation using MRI and clinical review data. Frontiers in Neuroscience, 19, 1661987.  (publisher, permanent link, preprint) 

• Procházková, N., Olson, C.V.L., Shariati, N. et al. (2025). Seizure occurrence in FCD type II is predicted by lesion position and linked to cytoarchitectural alterations. acta neuropathol commun 13, 251 (publisher, permanent link, preprint)

• Lasica, A., Filip, P., Burdová, K. et al. Precision of post-operative localization of deep brain stimulation electrodes. Sci Rep 15, 18652 (2025). (publisher, permanent link)

• Lucia Jajcay, David Tomeček, Renáta Androvičová, Iveta Fajnerová, Filip Děchtěrenko, Jan Rydlo, Jaroslav Tintěra, Jiří Lukavský, Jiří Horáček, Jaroslav Hlinka. Deviation from typical brain activity during naturalistic stimulation predicts personality traits. bioRxiv 2024.04.23.586759. (publisher, permanent link, preprint)

• Bianca Pfaffenseller, Jakub Schneider, Taiane de Azevedo Cardoso, Mario Simjanoski, Martin Alda, Flavio KapczinskI, Eduard Bakstein. Self-assessment and rest-activity rhythm monitoring for effective bipolar disorder management: a longitudinal actigraphy study. Int J Bipolar Disord 13, 34 (2025). (publisher, permanent link, preprint)

• Valentin Ladenhauf, Malik Galijasevic, Milovan Regodic, Verena Rass, Christian Freyschlag, Johannes Deeg, Leonhard Gruber, Michael Swoboda, Jakub Bochnicka, Stephanie Mangesius, Lukas Lenhart, Elke Ruth Gizewski, Astrid Ellen Grams. Arterial wall enhancement indicates higher reperfusion rates in non-ruptured aneurysms after endovascular treatment with stent-assisted coiling. Neuroradiology 67, 2327–2335 (2025). (publisher, permanent link)

• Nováková, L., Sojka, P., Voženílek, D., Sieger, T., Hasíková, L., Šenolt, L., Závada, J., Edwards, M. J., & Serranová, T. (2025). Prepulse inhibition of the blink reflex in functional neurological disorder and fibromyalgia. Brain, 149(7), 2323–2332. (publisher, permanent link)

• Lisgaras CP, de la Prida LM, Bertram E, Cunningham M, Henshall D, Liu AA, et al. The role of electroencephalography in epilepsy research—From seizures to interictal activity and comorbidities. Epilepsia. 2025; 66: 1374–1393. (publisher, permanent link, preprint)

• Igor Varga, Daniel Novak, Dusan Urgosik, Jan Kybic, Filip Ruzicka, Pavel Filip, Robert Jech, Andreas Horn, Eduard Bakstein (2025). Precise Electrode Co-Alignment in Deep Brain Stimulation Fusing Neuroimaging and Electrophysiology. European Journal of Neuroscience 62, no. 10: e70309. (publisher, permanent link, preprint)

• Guillaume Girier, Isa Dallmer-Zerbe, Jan Chvojka, Jan Kudláček, Přemysl Jiruška, Jaroslav Hlinka, Helmut Schmidt. (2025) Ion dynamics underlying the seizure delay effect of low-frequency electrical stimulation. PLOS Computational Biology 21(12): e1013838. (publisher, permanent link, preprint)

• Jana Kopřivová, Zuzana Kaňková, Přemysl Vlček, Marek Piorecký, Lenka Maierová, Zdeňka Bendová, Kateřina Skálová, Tereza Nekovářová. Bright light exposure reduces negative affect and modulates EEG activity in sleep-deprived and well-rested adolescents. Front. Behav. Neurosci. 19:1673093. (publisher, permanent link, preprint)

• Simcik, M., Andel, R., Pytelova, V., Javurkova, A., Zalud, J., Kalina, A., Kalinova, M., Stanzelova, K., Marusic, P., & Amlerova, J. (2025). Social cognition after epilepsy surgery in temporal lobe epilepsy: A long-term follow-up. Epilepsy & Behavior, 175, 110839. (publisher, permanent link, preprint)

• Filip, P., J. R. McCarten, L. Hemmy, et al. 2025. “ Clinical and MRI Correlates of β-Amyloid Load Inconsistent With Its Presumed Neurotoxicity in Cognitively Healthy Ageing.” Journal of Neurochemistry 169, no. 9: e70241. (publisher, permanent link)

• Greguš, D., Hlinka, J., Tylš , F. et al. Regional specificity of the cingulate cortex thickness association with the intensity of psilocybin experience: a replication study. Psychopharmacology (2025). (publisher, permanent link, preprint)

• Weiss V, Harsany M, Brichta J, Kojan M, Herzig R, Cervenak V, Filip P and Aulicky P (2025) Case Report: The lost art of cisterna magna puncture—teaching video. Front. Surg. 12:1595249. (publisher, permanent link)

• Lynch, I., Harmata, G. I. S., Barsotti, E. J., Fiedorowicz, J. G., Williams, A. J., Linkenmeyer, C., Smith, S., Smith, S., Richards, J. G., Long, J. D., Sikorová, S., Bakstein, E., Wemmie, J. A., & Magnotta, V. A. (2025). Feasibility and accuracy of the ASERT digital questionnaire in mood tracking for a longitudinal research study on bipolar disorder. Journal of Mood & Anxiety Disorders, 12, 100145. (publisher, permanent link)

• Rózsa, T., Cagnol, R. & Antolík, J. Iso-orientation bias of layer 2/3 connections unifies spontaneous, visually and optogenetically driven V1 dynamics. Nat Commun 17, 1901 (2026). (publisher, permanent link, preprint)

• Astill Wright, L., Bakstein, E., Saunders, K. et al. Performance of active and passive ambulatory assessment measures and mood monitoring in bipolar disorder: a systematic review. Int J Bipolar Disord 14, 4 (2026). (publisher, permanent link)

• Stuchlíková, Z., Biačková, N., Laskov, O. et al. Transcranial direct current stimulation and cognitive training in the treatment of cognitive deficit in schizophrenia: a randomized controlled trial. BMC Psychiatry 26, 102 (2026). (publisher, permanent link)

• Gajdoš, M., Schejbalová, M., Lamoš, M. et al. Dynamic functional connectivity is related to cognitive performance of prodromal Lewy body dementia. J Neural Transm (2026). (publisher, permanent link)

• Nagy, T., Piorecký, M., Janků, K., & Piorecká, V. (2026). Hybrid Adaptive Segmentation and Morphology-Based Classification of EOG for Automated Detection of Phasic and Tonic REM Sleep. Sensors, 26(4), 1389. (publisher, permanent link)

• Ding, Z., Tran, D., Ponder, K. et al. Functional bipartite invariance in mouse primary visual cortex receptive fields. Nat Neurosci 29, 851–863 (2026). (publisher, permanent link, preprint)

• Svoboda, M., Kikoťová, N., Kučerová, M., Dršata, J., Krtičková, J., Chrobok, V., & Chládková, K. (2026). Limited cross-modal activation to visual language in the auditory cortices of hearing-impaired children. NeuroImage, 329(1 April 2026), 121835. (publisher, permanent link)

• Filip P, Canna A, Grohn H, Moheet AA, Kumar AF, Li X, Zhang Y, Eberly LE, Seaquist ER, Mangia S. Disrupted neurovascular-endocrine coupling in type 1 diabetes with impaired awareness of hypoglycemia. J Clin Invest. 2026 Feb 19;136(8):e199725. (publisher, permanent link)

• D. Kiakou et al., "Classification of Functional Brain Patterns Elicited by Deep Brain Stimulation of the Subthalamic Nucleus in Parkinson’s Disease," in IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol. 34, pp. 2211-2223, 2026. (publisher, permanent link)

• Lasica A, Mangia S, Michaeli S, et al. Technical considerations of functional MRI in deep brain stimulation: recent advances and future perspectives. Neuroimage. 2026 May;331:121889. (publisher, permanent link)

• Skálová K, Maleček J, Kolář D, Červená K, Kopřivová J, Tufano J, Omcirk D, Padecký J, Vetrovsky T and Bendová Z (2026) The effects of total sleep deprivation on the circadian rhythms and psychophysiological factors in military cadets; a comparison between wakefulness in light and darkness. Front. Physiol. 16:1732257. (publisher, permanent link,)

• Soukupová, L., Janků, K., Hrubý, A., & Kopřivová, J. (2026). Self-Reported Emotion Regulation Following Group Cognitive Behavioral Therapy for Insomnia: A Pilot Study. International Journal of Cognitive Behavioral Therapy. (publisher, permanent link)

• Andrashko, V., Novák, T., Kopecek, M., Šuláková, A., Knop, V., & Horacek, J. (2026). Sympathetic activation but not dissociation linked to ketamine's sustained antidepressant effect. Therapeutic Advances in Psychopharmacology, 16. (publisher, permanent link)

• Caputi, L., Pidnebesna, A. & Hlinka, J. Integral Betti signatures of brain, climate and financial networks compared to hyperbolic, Euclidean and spherical models. Sci Rep 16, 2026 (2026). (publisher, permanent link, preprint)

• Jajcay N, Tomeček D, Fajnerová I, Rydlo J, Tintěra J, Horáček J, Lukavský J and Hlinka J (2026) Replication challenges in linking personality to resting-state functional connectomics. Front. Comput. Neurosci. 20:1796308. (publisher, permanent link, preprint)

• Kalinova, M., Kerkova, B., Kalina, A. et al. Temporal order of activations and interactions during arithmetic calculations measured by intracranial electrophysiological recordings in the human brain. Sci Rep 16, 5587 (2026). (publisher, permanent link, preprint)

• Ebel, M., Maulisová, A., Kudr, M., Jahodová, A., Bělohlávková, A., Splítková, B., Bukačová, K., Janča, R., Kynčl, M., Holubová, Z., Mamiňák, M., Rivera, G. A. R., Novák, V., Koblížek, M., Tichý, M., Libý, P., & Kršek, P. (2026). Epileptochirurgie u dětí operovaných do 3 let věku – zkušenost Centra pro epilepsie FN Motol. Česká a slovenská neurologie a neurochirurgie, 89(3), 162–169. (publisher, permanent link)

• Kršek, P., Ebel, M., Janča, R., Kurd, M., Jahodová, A., Bělohlávková, A., Straka, B., Splítková, B., Otáhalová, A., Rivera, G. A. R., Šanda, J., Kynčl, M., Bukačová, K., Maulisová, A., Tichý, M., & Libý, P. (2026). Současný koncept dětské epileptochirurgie: Čas je mozek! / Current concepts in pediatric epilepsy surgery: Time is brain!. Česká a slovenská neurologie a neurochirurgie, 89(4), 219–233. (publisher, permanent link)

• Holubová, Z., Kala, D., Čapek, V., Profantová, N., Splítková, B., Šanda, J., Prysiazhniuk, Y., Jiránková, K., Kudr, M., Kršek, P., Kynčl, M., & Otáhal, J. (2026). Structural and Quantitative MRI Signal Features in Pediatric Focal Cortical Dysplasia: Clinical Relevance. Physiological Research, 75(3), 597–612. (publisher, permanent link)

• Madhurima Bhattacharjee, Ioannis Vlachos, Aditi Kathpalia, Jaroslav Hlinka, Martin Brunovský, Martin Bareš, Milan Paluš (2026) Brain causality alterations in major depressive disorder treatment. Front. Psychiatry 16:1718216. (publisher, permament link, preprint)

• Aleš Hrubý, Karolina Janků, Daniela Dudysová, Linda Soukupová, Monika Kliková, Jana Kopřivová (2026). Insomnia and Emotion Regulation: A Narrative Review of Empirical Findings and Underlying Mechanisms. Psychiatrie 30(1). (publisher, permanent link, preprint)

• Tomas Hampejs, David Tomecek, Stanislav Jiricek, Vlastimil Koudelka, Lucia Jajcay, Dante Mantini, Jaroslav Hlinka. Brain network and oscillation dynamics mirror the inward and outward orientation of spontaneous thought. Sci Rep (2026). (publisher, permanent link, preprint)

• Kala, D., Abragimovich, T., Janča, R. et al. Beyond structural MRI: combined diffusion metric improve delineation of epileptogenic tissue in focal cortical dysplasia. Sci Rep 16, 26247 (2026). (publisher, permanent link, preprint)

• Biackova, N., Laskov, O., Adamová, A., Piorecka, V., Strobl, J., Jiricek, S., Hubený, J., Koudelka, V., Čechová, A., Böhmová, N.-A., & Klirova, M. (2026). Transcranial direct current stimulation in affecting neuropsychiatric symptoms of postCOVID syndrome: No change in microstates and functional connectivity. PLOS One, 21(6), e0351407. (publisher, permanent link)

• Dvořáková, M., N. Kikoťová, J. Urbanec, A. Goetz, and K. Chládková. 2026. “ Newborns’ Brains Detect Foreign Rhythm in Native-Language Speech.” Developmental Science 29, no. 5: e70254. (publisher, permanent link, preprint)

• Fu, J., Shrinivasan, S., Baroni, L., Ding, Z., Fahey, P., Pierzchlewicz, P. A., Karantzas, N., Ponder, K., Froebe, R., Ntanavara, L., Muhammad, T., Willeke, K. F., Wang, E., Ding, Z., TRAN, D., Papadopoulos, S., Patel, S., Reimer, J., Ecker, A. S., … Franke, K. (2026). Statistics of natural scenes shape contextual modulation in the visual cortex. Neuron, 114(13), 2473–2486.e9. (publisher, permanent link, preprint)

• Soukupová, L., Janků, K., Hrubý, A. et al. Self-Reported Emotion Regulation Following Group Cognitive Behavioral Therapy for Insomnia: A Pilot Study. Int. J. Cogn. Behav. Ther. (2026).  (publisher, permanent link)

• Gunia, A., Kalina, A., Javůrková, A. et al. The behavioral evidence of processing congruences and incongruences between Self- and Other-perspective-related representations during both perspective judgments. Psychological Research 90, 134 (2026). (publisher, permanent link, preprint)

• Bochin, M., Vejmola, Č., Koudelka, V., Jiříček, S., Nikolič, M., Šíchová, K., Páleníček, T. Effects of THC, CBD, and Their Combination on EEG Dynamics in Rats. Physiological Research. 2026, 75(2), 385-397. ISSN 0862-8408. E-ISSN 1802-9973. (publisher, permanent link)

• Pytelova, V., Gatialova, E., Zalud, J., Modrak, M., Ksirova, E., Kalinova, M., Kalina, A., Marusic, P., & Amlerova, J. (2026). Attributional bias in epilepsy: Differences between genetic generalised epilepsy, temporal lobe epilepsy and healthy controls. Epilepsy Research, 226, 107836. (publisher, permanent link, preprint)

• Baratin, C., Lopez-Persem, A., Kahane, P. et al. Complementary and opponent value signals in the human brain support choosing the best and avoiding the worst. Nat Commun 17, 9760 (2026). (publisher, permanent link, preprint)

• Wilde, M., D. Kiakou, E. Bakstein, P. Filip, and D. Novak. 2026. “ Predictive Models for Motor Outcomes From Deep Brain Stimulation in Parkinson's Disease: A Systematic Review.” European Journal of Neuroscience 64, no. 3: e70644. (publisher, permanent link, preprint)

• Kathpalia, A., Vlachos, I., Hlinka, J., Brunovský, M., Bareš, M., Paluš, M. EEG connectivity changes in early response to antidepressant treatment. Clinical Neurophysiology. 2026, 188(August 2026), 2111905. ISSN 1388-2457. E-ISSN 1872-8952. (publisher, permanent link, preprint)

• Klírová, M., Stančák, A., Novák, T., & van den Heuvel, O. A. (2026). Repetitive transcranial magnetic stimulation treatment for obsessive–compulsive disorder. Current Opinion in Psychiatry, 39(5), 364–374. (publisher, permanent link)

• Rune Andreas Kroken, Erik Johnsen, Renata Alisauskiene, Liss Gøril Anda, Christoffer Bartz-Johannesen, Jan Øystein Berle, Jill Bjarke, Øystein Bruserud, Farivar Fathian, W. Wolfgang Fleischhacker, Kenneth Hugdahl, Inge Joa, Eirik Kjelby, Tor Ketil Larsen, Else-Marie Løberg, Ieva Ratke, Maria Rettenbacher, Igne Sinkeviciute, Silje Skrede, Lena Stabell, Vidar Martin Steen, Anja Torsvik, Solveig Klæbo Reitan. Cytokine changes during a 12-month pragmatic randomized trial in schizophrenia spectrum disorders comparing amisulpride, aripiprazole and olanzapine, Psychiatry Research, Volume 364, 2026, 117266. (publisher)

Data

BRADY project repository on Zenodo (both for data and final publications). 

Code

BRADY project repository on Github contains the published source codes.

• Christian G. Fink, Pavel Sanda, Logan Bayer, Eroma Abeysinghe, Maxim Bazhenov, Giri P. Krishnan. Python/NEURON code for simulating biophysically realistic thalamocortical dynamics during sleep. Software Impacts. 21, 100667, 2024. (preprint, publisher, permanent link, code).